Bartholomew

More friendly python interface for BART.

I also want this to be able to run BART on remote computer through ssh, to remove BART as a strict dependency for the local machine, much like we treat Gadgetron.

Examples

>>> import Bartholomew as B
>>> # Usage: B.[bart-func](args)
>>> traj_rad = B.traj(x=512, y=64, r=True)
>>> ksp_sim = B.phantom(k=True, s=8, t=traj_rad)
>>> igrid = B.nufft(ksp_sim, i=True, t=traj_rad)

Notice that input ndarrays are positional arguments (e.g., ksp_sim is the first argument for nufft instead of the last).

To get comma separated lists (e.g., -d x:x:x), use the List type:

>>> img = B.nufft(ksp_sim, i=True, d=[24,24,1], t=traj_rad)

To get space separated lists (e.g., resize [-c] dim1 size1 … dimn), use Tuple type:

>>> ksp_zerop = B.resize(lowres_ksp,c=(0,308,1,308))

class mr_utils.bart.bartholomew.BartholomewObject

Bartholomew object - more simple Python interface for BART.

Examples

User is meant to import instance Bartholomew, e.g.,

>>> from mr_utils.bart import Bartholomew as B

format_args(args)

Take in positional function arguments and format for command-line.

format_kwargs(kwargs)

Take in named function arguments and format for command-line.

get_num_outputs()

Return how many values the caller is expecting